Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs55751529 | chr3:100915261 | A/C | 2.3E-7 | 406 | 15.67 | 14.98 | 10.07 | KM Plot |
| LGG | rs55765521 | chr6:46927523 | G/A | 1.91E-5 | 402 | 15.03 | 16.1 | 12.5 | KM Plot |
| LGG | rs55768488 | chr4:84452565 | G/A | 3.12E-6 | 399 | 14.9 | 18.63 | 5.17 | KM Plot |
| LGG | rs55804224 | chr17:75206151 | C/G | 0.000181 | 407 | 15.17 | 17.62 | 15.53 | KM Plot |
| LGG | rs55823432 | chr21:30553969 | A/C | 0 | 405 | 15.37 | 13.87 | 3.2 | KM Plot |
| LGG | rs55848502 | chr10:122684770 | C/T | 7.07E-5 | 402 | 16.27 | 14.97 | 17.67 | KM Plot |
| LGG | rs55861967 | chr5:92810696 | C/G | 1.08E-5 | 406 | 14.93 | 17.07 | 18.57 | KM Plot |
| LGG | rs55876911 | chr11:3037837 | T/G | 0.000107 | 402 | 15.6 | 13.7 | 19.27 | KM Plot |
| LGG | rs55900063 | chr2:202042451 | A/G | 1.82E-6 | 405 | 15.32 | 15.57 | 4.45 | KM Plot |
| LGG | rs55920689 | chr3:100915598 | T/C | 2.3E-7 | 406 | 15.67 | 14.98 | 10.07 | KM Plot |
| LGG | rs55927877 | chr10:122621824 | G/C | 0.000121 | 401 | 16.33 | 14.43 | 16.3 | KM Plot |
| LGG | rs55934624 | chr9:93917285 | T/G | 5.17E-5 | 396 | 14.37 | 19.03 | 19.2 | KM Plot |
| LGG | rs55935747 | chr3:153674323 | G/T | 0 | 405 | 15.15 | 16.77 | 0.23 | KM Plot |
| LGG | rs55957807 | chr4:84427439 | A/T | 1.11E-15 | 397 | 14.85 | 18.13 | 5.17 | KM Plot |
| LGG | rs55968513 | chr10:122618579 | A/T | 0.000193 | 398 | 16.33 | 14.43 | 14.93 | KM Plot |